Published January 28, 2020 | Version 1.1
Dataset Open

mOTUs 1.1 taxonomic profiling of the CAMI 2 Mouse Gut Toy data set, samples 0-63

  • 1. Helmholtz Centre for Infection Research

Description

Software: mOTUs
SoftwareVersion: 1.1
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: http://www.bork.embl.de/software/mOTUs1/
DockerImage: stefanjanssen/docker_profiling_tools:motu
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: mOTU.v1.padded
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
stefanjanssen/docker_profiling_tools:motu

Files

Files (4.1 MB)

Name Size Download all
md5:8e44dbd52db598e11d0d2f3d08fdb273
4.1 MB Download