feelpp/feelpp: Feel++ v0.107

Full Changelog

Implemented enhancements:

• make qs_laplacian user friendly #1412
• Add simple functionality to find file remotely #1401
• add traits for mesh filters, reference convex and geoelement #1394
• Provide access to face marker in geomap and DSEL #1393
• Improve mesh_exporter tool to export all kind of information about a mesh #1392
• support range of faces in expression exports in Exporter #1390
• Update the doxygen documentation in Exporter #1388
• Add exporter application in tools #1378
• Enable ibc partitioning in mesh partitioner app #1377
• Support create linear forms from bilinear forms #1359
• Optimize TimeSet #1358
• Optimize ExporterEnsight #1357
• Optimize integration on MeshStructured #1356
• Optimize structured mesh to feelpp dof relation #1353
• Optimize pointIdToDof relation construction #1352
• refactor Dof, FaceDof and LocalDof data structure #1351
• Statistics: display value marker by marker when computed on a list of markers #1350
• Add Points to Statistics in toolbox electric #1347
• Add helper function for mesh support and associated mesh filters #1344
• support transpose for bilinear forms #1343
• Support mass matrix with exact integration #1342
• implement min max function in parser #1341
• Balancing load for IBC #1340
• Provide neighbor dofs of a dof #1326
• Support parameters in HDG toolbox #1323
• Handle block forms copy operators consistently with bi/linear forms #1322
• How to couple a toolbox with an external sequential software #1320
• Improve support for repository directory in .cfg/command line options #1316
• Support micro-benchmarking #1313
• Warning: explicitly defaulted copy assignment operator is implicitly deleted #1312
• Enabling defining bilinear forms after declaration #1309
• Add helper aliases for functionspaces #1308
• set minimal context for geomap and fe #1303
• export measures on markers #1302
• Static condensation for HDG with IBC and ODE #1297
• Support boost 1.69.0-1.70.0 #1296
• Registering all properties in ModelMaterial #1294
• Support dynamic context in expressions #1288
• Add python support for ModelProperties #1287
• Support different geomap and finite element contexts in Element #1285
• Bump up C++ language level to C++17 #1282
• Update address sanitizer support #1281
• Implement update function in snes solver #1277
• Add MSO4SC blueprints for Feel++ toolboxes #1176
• Add += -= operators with piecewise constant functions to elements of function spaces #1088
• Add concurrency in bilinear forms #1057
• provide normal component evaluation of an expression in the language #1014
• performance drop in integrals on internal faces between data on different but related meshes #1011
• Re-organization of code in benchmarks #1001
• support task parallelism in StaticCondensation #1000
• Describe simulation using json #943
• Perform performance assessment of HDG/Static Condensation framework #910
• Create function space from a range of elements #884
• Support Holo3 Binary Files #831
• Support HDG Stencil #819
• testsuite #778
• support Eigen::Tensor to handle high dimensional tensor computations in finite element #739
• bdf - default behavior #726
• Cmake does not warn when libcln is not found. #680
• Reporting framework #607
• Support cereal for serialization rather than boost.serialisation #487
• add altitude\(\) keyword #468
• data directory #432
• Support MKL (starting from v11) #420
• Improve Navier-Stokes solver benchmark #347
• Special compliant treatment #316
• Support for material conditions framework #285
• Support for boundary condition framework #284
• Refactor CRB/Model interface #283
• Reduce compilation memory footprint #279
• Refactor GeoTool #277
• Refactor GeoND, GeoEntity and GeoElement #235
• Port Feel++ on Windows #65
• Feature/exporter timeset refactoring #1380 (vincentchabannes)
• Optimize/holo3 #1360 (prudhomm)
• Feature/sc geomap #1297 #1330 (prudhomm)

Fixed bugs:

• Support clang 9 #1386
• Support PETSc 3.10, 3.11 and 3.12 #1385
• expression compiler should default to g++ #1383
• Installation of python scripts in quickstart is broken #1382
• Option gmsh.scale doesn't work when a mesh is load with a geo file #1366
• Trim special characters in CSV files #1345
• Bug in OperatorInterpolation in case of sibling meshes #1319
• bug in operator+= when applying it on self #1310
• FluidMechanics toolbox crashes with Stokes model #1306
• Support C++17 with libc++ #1299
• Integral Boundary Condition in parallel fail in sc-geomap #1290
• Buildkite pipelines do not fail on failures #1283
• MUMPS support is broken in parallel on ubuntu/cosmic with petsc 3.9 #1276
• Support boost 1.68 #1247
• Multifluid test case broken #1199
• singularity build fails #1044
• Travis report successful build whereas the build failed #1015
• Review and fix Octave wrappers #850
• matMatMult (petsc) #789
• Exporter ensightgold with option ensightgold.save-face #665
• Troubles with ginac on macos/macport #522
• FTE in test_solve_leak in parallel #265
• Gmsh refine by splitting is buggy in 3D #175
• CDash #141

Closed issues:

• Add support for tabulate to create nice tables in C++ #1413
• Clean fmu/fmi support and support FMI generated by OpenModelica 1.13/1.14 #1399
• thermoelectric toolbox test fails in nonlinear #1398
• Add FMILib as contrib submodule #1397
• add mesh_exporter tool documentation #1391
• Add support for parameters in Statistics expression #1355
• feelpp_toolbox_thermoelectric fails with 2 domains (1 for electric, 2 for electric) #1339
• Running feelpp_toolbox_thermoelectric with --case.config-file crash #1338
• bug in dynamic context expression #1335
• HDG toolbox : Robin BC yielding high error #1333
• Support View in CreateSubmesh #1328
• Sympy generates numbers with L suffix not supported by Ginac #1321
• Configure line search type in snes with the command line #1311
• Setting the options prefix for the HDG toolbox apps #1292
• Add test for polynomial context #1286
• Problem with FeelFMI - wrong results #1278
• Add support for Gmsh 4 #1267
• Compute elements sets with marked entities #1263
• Install, rename and document screenshot python script #1253
• update cmake policy CMP0045 #1232
• FMU export and XML file associated the model #1132
• Update log directory #1104
• Undeclared identifier with nlopt #1093
• FTBS CRB: biosavart not compiling/linking #1066
• Support singularity @ mesostra #961
• Getting more done in GitHub with ZenHub #906
• testsuite/feelpde: missing model files #905
• add a version number to installed libs #901
• Add an option for max dimension of the fluid model #899
• Create small tests for toolboxes applications to be run after compilation #857
• FindPETSc.cmake #734
• Eigen solver issue in parallel #719
• Several tests segfault when not using mpiexec #563
• Add support for nx,ny,nz in Ginac to provide the normal components #558
• Ginac : Using the same filename doesn't update the expression #542
• How to build a pdf for the doc of feelpp? #540
• Turek compile failed, Please help #504
• Suggestion on an alternative place for user discussion #493
• Port Feel++ on BGQ system (fermi/turing) #351
• Inspection method -- coercivity constant -- EIM #333
• Optimal PETSc configuration in Debian/Ubuntu #286
• Boost/feel++ compilation documentation #215

Merged pull requests:

• update parameter values for initial conditions #1389 (romainhild)
• Compiling with PETSc master and no HDF5 #1379 (prj-)
• Fix/boost171 #1376 (prudhomm)
• Compilation failing on macOS with clang++ #1370 (prj-)
• Fix sign [ci skip] #1367 (lsala)
• Sala patch develop #1336 (prudhomm)