ablab/spades: SPAdes 3.14.0
Authors/Creators
- snurk
- Anton Korobeynikov
- Dmitry-Antipov
- andrewprzh
- Mikhail Dvorkin1
- AntonBankevich
- Nikolay Vyahhi
- alexeigurevich
- Alexander Sirotkin
- Yuri Gorshkov
- Mariya Davydova
- Sergey Nikolenko
- Yakov Sirotkin
- Alex
- Alex Davydow
- valery-l
- Alexander S. Kulikov
- Olga Kunyavskaya
- Ira
- Alexander Shlemov
- Alexander Opeykin
- Son Pham2
- Artem Tarasov3
- Valentin Fondaratov4
- Yana Safonova2
- Vlad Saveliev5
- Elena Bushmanova6
- Dmitry Meleshko
- Anton Garder
- Kuprashevich Maksim7
- 1. Algorithmic Biology Lab
- 2. UCSD
- 3. @nutanix
- 4. JetBrains
- 5. @UMCCR
- 6. CAB, SPSU
- 7. Home
Description
NEW: BiosyntheticSPAdes pipeline for predicting Biosynthetic Gene Clusters. NEW: Hybrid transcriptome assembly with rnaSPAdes. NEW: Plasmid detection from metagenomic samples. NEW: Special --isolate option for assembly of standard datasets with good coverage (>100x). NEW: Standalone tool for reads filtration based on k-mer coverage. NEW: Standalone tool for estimating approximate number of unique k-mers in reads. CHANGE: Improved SPAligner tool. CHANGE: Reworked python code, faster sequence transfer between different k-mer stages. CHANGE: Major performance improvements and memory consumption reduction in graph construction, simplification procedures and throughout the whole pipeline. FIX: BWA aligner failure for large graphs. FIX: Failure when additional paired-end libraries with reads shorter than final k-mer length are provided.
Files
ablab/spades-v3.14.0.zip
Files
(19.1 MB)
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md5:b4490d781aecbc0ec9983522d0b284f9
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Additional details
Related works
- Is supplement to
- https://github.com/ablab/spades/tree/v3.14.0 (URL)