HilbertSimilarity : estimating sample similarity in single cell high dimensional datasets
Creators
Description
Quantifying similarity between high-dimensional single cell samples is challenging, and usually requires
some simplifying hypothesis to be made. By transforming the high dimensional space into a high dimensional grid,
the number of cells in each sub-space of the grid is characteristic of a given sample. Using a Hilbert curve
each sample can be visualized as a simple density plot, and the distance between samples can be calculated from
the distribution of cells using the Jensen-Shannon distance. Bins that correspond to significant differences
between samples can identified using a simple bootstrap procedure.
Files
hilbertSimilarity-0.4.3.zip
Files
(45.7 kB)
Name | Size | Download all |
---|---|---|
md5:378e2fa3bdb6c6e3776ab092e9bdfd00
|
45.7 kB | Preview Download |
Additional details
Related works
- Is supplemented by
- Software: https://github.com/yannabraham/hilbertSimilarity/tree/0.4.3 (URL)