Published October 6, 2025 | Version 25.2.2
Software Open

fMRIPrep: a robust preprocessing pipeline for functional MRI

Creators

  • 1. Department of Psychology, Stanford University, CA, USA
  • 2. Department of Radiology, Lausanne University Hospital and University of Lausanne
  • 3. Department of Psychology, Stanford University

Contributors

Researchers:

  • 1. Department of Psychology, Stanford University
  • 2. University of Texas at Austin
  • 3. Perelman School of Medicine, University of Pennsylvania, PA, USA
  • 4. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
  • 5. Université de Montréal, Montreal, QC, CA
  • 6. Neurospin, CEA
  • 7. Department of Radiology, Lausanne University Hospital and University of Lausanne
  • 8. Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, MD, USA
  • 9. Child Mind Institute
  • 10. Department of Psychology, New York University
  • 11. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
  • 12. Center for Lifespan Changes in Brain and Cognition, University of Oslo
  • 13. Dartmouth College: Hanover, NH, United States
  • 14. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
  • 15. Computational Neuroimaging Lab, BioCruces Health Research Institute
  • 16. Department of Psychology, Columbia University
  • 17. Speech & Hearing Bioscience & Technology Program, Harvard University
  • 18. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
  • 19. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 20. Department of Pediadrics, University of Calgary
  • 21. Brigham and Women's Hospital, Mass General Brigham, Harvard Medical School, MA, USA
  • 22. Department of Psychology, University of California, Berkeley
  • 23. Charite Universitatsmedizin Berlin, Germany
  • 24. McLean Hospital Brain Imaging Center, MA, USA
  • 25. Department of Neuroscience, University of Pennsylvania, PA, USA
  • 26. Department of Pediatrics, University of Minnesota, MN, USA
  • 27. URPP Dynamics of Healthy Aging, University of Zurich
  • 28. Machine Learning Team, National Institute of Mental Health, USA
  • 29. Florey Institute of Neuroscience and Mental Health
  • 30. Department of Radiology, Weill Cornell Medicine
  • 31. Department of Psychology, Harvard University
  • 32. Neuroscience Program, University of Iowa
  • 33. Montreal Neurological Institute, McGill University
  • 34. Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
  • 35. Department of Psychology, New York University, NY, USA
  • 36. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
  • 37. Department of Psychiatry, University of Pennsylvania
  • 38. QIMR Berghofer, Brisbane, Australia
  • 39. Department of Psychiatry, Icahn School of Medicine at Mount Sinai
  • 40. Center for Brain Imaging, New York University
  • 41. Cyceron, UMS 3408 (CNRS - UCBN), France
  • 42. Department of Psychiatry, University of Pittsburgh
  • 43. Department of Psychiatry, McGill University
  • 44. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
  • 45. Max Planck Institute for Empirical Aesthetics
  • 46. Department of Psychology, University of Washington
  • 47. The University of Washington eScience Institute, WA, USA
  • 48. McGovern Institute for Brain Research, MIT, MA, USA

Description

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Files

nipreps/fmriprep-25.2.2.zip

Files (24.4 MB)

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Additional details

Related works

Documents
https://fmriprep.org (URL)
Is part of
10.1038/s41592-018-0235-4 (DOI)

Software

Repository URL
https://github.com/nipreps/fmriprep