scikit-bio: scikit-bio 0.4.1: TabularMSA and phylogenitc diversity metrics
Creators
- Jai Ram Rideout1
- Greg Caporaso
- Evan Bolyen
- Daniel McDonald
- Jorge Cañardo Alastuey
- Yoshiki Vázquez Baeza2
- Anders Pitman
- mortonjt
- Jose Navas3
- J W Debelius
- Zech Xu4
- Kestrel Gorlick
- adamrp
- Joshua Shorenstein5
- Laurent Luce
- Will Van Treuren
- John Chase
- charudatta-navare
- Colin Brislawn
- Antonio Gonzalez6
- Weronika Patena7
- Karen Schwarzberg
- teravest
- Jens Reeder
- shiffer1
- nbresnick
- Chris Cope
- alexbrc
- jradinger
- Kevin Murray8
- 1. Northern Arizona University
- 2. University of California, San Diego; Knight Laboratory
- 3. University of California, San Diego
- 4. UCSD
- 5. CU Boulder
- 6. Knight Lab
- 7. Carnegie Institution for Science
- 8. Australian National University (ANU)
Description
We're very excited to announce scikit-bio 0.4.1. This release introduces several big new features, including the new TablularMSA object which has replaced the Alignment object, the addition of phylogenetic diversity metrics (unweighted UniFrac, weighted UniFrac, and Faith's Phylogenetic Diversity), and a lot more.
You can review the CHANGELOG.md for a complete description of the changes in this release. To learn about what you can do with scikit-bio, you should browse our (awesome!) API documentation.
We expect that scikit-bio 0.4.1 will be the last release that includes Python 2.7 support. In our next release we'll be transitioning to Python 3 only, as discussed in RFC 2.
Be sure to follow @scikitbio on twitter for project updates, and as always, thanks for your interest in scikit-bio!
Files
scikit-bio-0.4.1.zip
Files
(8.4 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/biocore/scikit-bio/tree/0.4.1 (URL)