Published December 20, 2024 | Version 3.18.0
Software Open

nf-core/rnaseq: nf-core/rnaseq v3.18.0 - Lithium Lynx

Creators

  • 1. Seqera
  • 2. @seqeralabs
  • 3. Boehringer Ingelheim
  • 4. @seanome
  • 5. @SciLifeLab
  • 6. Inivata
  • 7. @NBISweden
  • 8. Johns Hopkins University
  • 9. @qbicsoftware
  • 10. Seqera Labs
  • 11. Francis Crick Institute @crickbabs
  • 12. HKI Jena, MPI-EVA Leipzig
  • 13. CRG
  • 14. The Francis Crick Institute

Description

What's Changed

  • Adding differential expression analysis tutorial pages to Usage section by @LorenzoS96 in https://github.com/nf-core/rnaseq/pull/1447
  • Add FASTQ linting during preprocessing by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1461
  • Add umicollapse as an alternative to umi-tools by @siddharthab in https://github.com/nf-core/rnaseq/pull/1369
  • Move channel operations outside of the onComplete() block by @robsyme in https://github.com/nf-core/rnaseq/pull/1463
  • Add test suite for UMI handling functionality by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1467
  • Factor out umi handling by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1466
  • Remove reference to unused "skip_sample_count" value in email templates by @robsyme in https://github.com/nf-core/rnaseq/pull/1459
  • Minor docs fix by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1469
  • Update subworkflow to account for fix to bad argument handling by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1470
  • Fix prepare_genome subworkflow for sortmerna by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1471
  • Bump STAR modules by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1473
  • Bump versions to 3.18.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1474
  • Fix log publishing around umitools/ umicollapse by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1475
  • Update from master by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1477
  • Update CHANGELOG.md by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1479
  • Dev -> Master for 3.18.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1476

New Contributors

  • @LorenzoS96 made their first contribution in https://github.com/nf-core/rnaseq/pull/1447
  • @siddharthab made their first contribution in https://github.com/nf-core/rnaseq/pull/1369

Full Changelog: https://github.com/nf-core/rnaseq/compare/3.17.0...3.18.0

Files

nf-core/rnaseq-3.18.0.zip

Files (7.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnaseq/tree/3.18.0 (URL)

Software

Repository URL
https://github.com/nf-core/rnaseq