Published September 10, 2019
| Version v5.0.1
Software
Open
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Creators
- 1. Theoretical Biology and Bioinformatics, Science for Life, Utrecht University, The Netherlands.
- 2. Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, Nijmegen, The Netherlands.
Description
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formated appropriately.
Files
CAT_v5.0.1.zip
Files
(40.9 kB)
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