Published September 5, 2019 | Version 1
Working paper Open

SEPATH: Benchmarking the Search for Pathogens in Human Tissue Whole Genome Sequence Data Leads to Template Pipelines - Analysis Repository

Creators

  • 1. University of East Anglia
  • 2. Earlham Institute
  • 3. University of East Anglia, Earlham Institute

Description

This repository represents a collection of scripts used as part of the analysis of the SEAPTH paper:

Gihawi, A. Rallapalli, G. Hurst, R. Cooper, C.S. Leggett, R.M. Brewer, D.S. SEPATH: Benchmarking the Search for Pathogens in Human Tissue Whole Genome Sequence Data Leads to Template Pipelines. Genome Biol. (publication pending)

We provide a copy of the github repositories associated with the submitted publication, for further information and recent developments please visit: https://github.com/UEA-Cancer-Genetics-Lab/

Notes

Funding provided by Big C cancer charity, grant reference: 16-09R. The research presented in this paper was carried out on the High Performance Computing Cluster supported by the Research and Specialist Computing Support service at the University of East Anglia. We acknowledge and thank support received from Big C, Prostate Cancer UK, Cancer Research UK C5047/A14835/A22530/A17528, Bob Champion Cancer Trust, The Masonic Charitable Foundation successor to The Grand Charity, The King Family and the Stephen Hargrave Trust. Please get in touch if anything further is required: a.gihawi@uea.ac.uk Data also present on: https://github.com/UEA-Cancer-Genetics-Lab/sepath_paper

Files

sepath_paper.zip

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