Published June 11, 2019
| Version v1.4
Software
Open
soedinglab/prosstt: accepted aye-aye
Description
A busy year and I forgot to make a new release, so now that PROSSTT is published here it is.
major changes:
- new sampling strategies (density sampling, velocity sampling)
- can simulate non-informative genes
- added a lot of example notebooks
- cell size now can vary
- added option for delayed commitment branching ("probabilistic branching")
- PROSSTT can learn hyperparameters from data now
minor changes:
- updated documentation, moved to readthedocs
- now supports newick input and file format (thanks @scottgigante)
- branch naming works better now
- improved how expression programs get sampled, can mostly avoid extreme cases that distort sims
Files
soedinglab/prosstt-v1.4.zip
Files
(1.5 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/soedinglab/prosstt/tree/v1.4 (URL)