Published June 10, 2019 | Version v1
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MD simulation trajectory of cannabidiol in the cannabinoid type 1 receptor

  • 1. Pontificia Universidad Católica de Chile

Description

MD simulation trajectory of cannabidiol in the presence of an orthosteric THC and Rimonabant in the CB1R active and inactive conformations respectively.  The protein–ligand complexes were inserted in a POPC lipid bilayer and solvated in a TIP3 water box with Na+ and Cl- ions. Simulations were run with NAMD 2.9 software using periodic boundary conditions and Particle Mesh Ewald (PME) for long-range electrostatics. Total production time for the inactive and active receptor conformations were 25 ns and 50 ns respectively.
 

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