Published November 18, 2024
| Version 2.4.0
Software
Open
nf-core/bacass: v2.4.0
Creators
- 1. Boehringer Ingelheim
- 2. QBiC
- 3. Seqera
- 4. @seqeralabs
- 5. @ScilifelabDataCentre
- 6. Robert Bosch GmbH
Description
v2.4.0 nf-core/bacass: "Yellow Copper Crayfish" 2024/11/05
Changed
- #180 Bump version 2.4.0.
- #169 Refactored long-reads polishing step.
- #167 Remove params.save_merged as merged reads are not used in downstream analysis.
- #159 Updated Kmerfinder module and increased memory.
- #150 Replace local unicycler module with nf-core module + bump version.
Added
- #176 Update nf-core/bacass to nf-core-tools v3.0.2
TEMPLATE. - #166 Added FastQC after-trimming section to MultiQC report.
- #158 Support automatic concatenation of FastQ files for the same sample.
Fixed
- #183 Fix DFAST issue in conda environment by updating its version.
- #182 Uncommented required line to pass linting test in
--releasemode. - #179 Fixed matrix.test_name in linting and missing features from template 3.0.2.
- #178 Fixed bakta running only for one sample.
- #169 Fixed long reads polishing input channel.
- #168 Fix wrong metadata in canu input channel.
- #163 Fixed
params.save_mergedto properly save merged files. - #160 Fixed memory issues in KmerFinder, fixed handling of no species detected, and fixed handling of empty fasta files in the prokka/bakkta channel.
- #157 Fixed corrupted zenodo URL of Kmerfinder database.
- #154 Fixed kmerfinder script and increase resources to prevent memory issues.
- #153 Update
.nf-core.ymlto fix files_unchanged section for accurate linting checks.
Dependencies
| Tool | Previous version | New version | | --------- | ---------------- | ----------- | | Dfast | 1.2.20 | 1.3.2 | | Unicycler | 0.4.8 | 0.5.0 |
Deprecated
Files
nf-core/bacass-2.4.0.zip
Files
(1.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:ee0ae18acd7a06c90d8e1f052b18e5ad
|
1.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/bacass/tree/2.4.0 (URL)