Published March 29, 2019
| Version 1.0.0
Software
Open
DD-DeCaF/caffeine: Version 1
Creators
- 1. The Novo Nordisk Foundation Center for Biosustainability
- 2. Genialis d.o.o
Description
- A user can manually design a strain (media optimization, gene and reaction knockouts, overexpression, downregulation) on the interactive pathway map given that she can provide at least a genome-scale metabolic model that passes memote tests sufficiently as a minimal input.
- A users can predict strain designs for a given organism and target molecule. Strain designs can be further evaluated on metabolic pathway maps.
- A user can rely on simulations integrating all the available data in a sensible manner, for example, if a simulation is chosen for an experimental dataset that features fluxomics and metabolomics data, than reaction bounds and directionalities will be appropriately constrained.
- A user can upload and manage models and maps on the platform.
Files
DD-DeCaF/caffeine-1.0.0.zip
Files
(5.0 MB)
| Name | Size | Download all |
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md5:858d123138a02381f74dc60b73c53912
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5.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/DD-DeCaF/caffeine/tree/1.0.0 (URL)