Published March 22, 2019
| Version v0.11.1
Software
Open
ngless-toolkit/ngless: Release 0.11.1
Authors/Creators
- 1. Fudan University
- 2. Trouva
- 3. Gitter
Description
Release 0.11.1 fixes issues in 0.11.0 (which should not be used).
Release 0.11 User-visible improvements since version 0.10- Module samtools (version 0.1) now includes
samtools_view - Add
--verboseflag to check-install mode (ngless --check-install --verbose) - Add early checks for input files in more situations (#33)
- Support compression in
collect()output (#42) - Add smoothtrim() function
- Fix bug with
orf_find&prots_outargument - Fix bug in garbage collection where intermediate files were often left on disk for far longer than necessary.
- Fix CIGAR (#92) for select() blocks
- Switched to diagrams package for plotting. This should make building easier as cairo was often a complicated dependency.
- Update to LTS-13 (GHC 8.6)
- Update minimap2 version to 2.14
- Call bwa/minimap2 with interleaved fastq files. This avoids calling it twice (which would mean that the indices were read twice).
- Avoid leaving open file descriptors after FastQ encoding detection
- Tar extraction uses much less memory now (#77)
Files
ngless-toolkit/ngless-v0.11.1.zip
Files
(5.4 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:4837c1f401083f989562c43aa0f053b7
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5.4 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ngless-toolkit/ngless/tree/v0.11.1 (URL)