Published March 6, 2024
| Version 23.2.1
Software
Open
fMRIPrep: a robust preprocessing pipeline for functional MRI
Creators
- 1. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
- 2. Department of Psychology, Stanford University
- 3. Department of Psychology, Florida International University
- 4. Neuroscience Program, University of Iowa
- 5. Montreal Neurological Institute, McGill University
- 6. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
Contributors
Researchers:
- Provins, Céline1
- Madison, Thomas2
- Smith, Robert E.3
- Papadopoulos, Dimitri4
- Finc, Karolina5
- Feingold, Franklin6
- Tooley, Ursula A.7
- Bhagwat, Nikhil8
- Halchenko, Yaroslav O.9
- Benson, Noah C.10
- de la Vega, Alejandro11
- Schaefer, Theo A.J.12
- Urchs, Sebastian8
- Nielson, Dylan M.13
- Heinsfeld, Anibal S.14
- Waller, Lea15
- Mentch, Jeff16
- Lurie, Daniel J.17
- Erramuzpe, Asier18
- Jamison, Keith W.19
- Wexler, Joseph B.6
- Plunkett, Dillon20
- Nitsch, Alexander12
- Ma, Feilong9
- Adebimpe, Azeez21
- Amlien, Inge K.22
- Bellec, Pierre23
- Cieslak, Matthew21
- Devenyi, Grabriel A.24
- Frederick, Blaise B.25
- Gomez, Daniel E. P.26
- Groen, Iris I. A.27
- Isik, Ayse Ilkay28
- Jacoby, Nir29
- Kruper, John30
- Liem, Franz31
- Moodie, Craig A.6
- Naveau, Mikaël32
- Rivera-Dompenciel, Adriana33
- Satterthwaite, Theodore D.21
- Sitek, Kevin R.16
- Sneve, Markus H.22
- Stojić, Hrvoje34
- Thompson, William H.6
- Valabregue, Romain35
- Velasco, Pablo36
- Wright, Jessey6
- Ye, Zhifang37
- Ghosh, Satrajit S.38
- 1. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 2. Department of Pediatrics, University of Minnesota, MN, USA
- 3. Florey Institute of Neuroscience and Mental Health
- 4. Neurospin, CEA
- 5. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
- 6. Department of Psychology, Stanford University
- 7. Department of Neuroscience, University of Pennsylvania, PA, USA
- 8. Montreal Neurological Institute, McGill University
- 9. Dartmouth College: Hanover, NH, United States
- 10. Department of Psychology, New York University
- 11. University of Texas at Austin
- 12. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 13. Machine Learning Team, National Institute of Mental Health, USA
- 14. Child Mind Institute
- 15. Charite Universitatsmedizin Berlin, Germany
- 16. Speech & Hearing Bioscience & Technology Program, Harvard University
- 17. Department of Psychology, University of California, Berkeley
- 18. Computational Neuroimaging Lab, BioCruces Health Research Institute
- 19. Department of Radiology, Weill Cornell Medicine
- 20. Department of Psychology, Harvard University
- 21. Perelman School of Medicine, University of Pennsylvania, PA, USA
- 22. Center for Lifespan Changes in Brain and Cognition, University of Oslo
- 23. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 24. Department of Psychiatry, McGill University
- 25. McLean Hospital Brain Imaging Center, MA, USA
- 26. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
- 27. Department of Psychology, New York University, NY, USA
- 28. Max Planck Institute for Empirical Aesthetics
- 29. Department of Psychology, Columbia University
- 30. Department of Psychology, University of Washington
- 31. URPP Dynamics of Healthy Aging, University of Zurich
- 32. Cyceron, UMS 3408 (CNRS - UCBN), France
- 33. Neuroscience Program, University of Iowa
- 34. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 35. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
- 36. Center for Brain Imaging, New York University
- 37. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
- 38. McGovern Institute for Brain Research, MIT, MA, USA
Description
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Files
nipreps/fmriprep-23.2.1.zip
Files
(24.0 MB)
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Additional details
Related works
- Documents
- https://fmriprep.org (URL)
- Is part of
- 10.1038/s41592-018-0235-4 (DOI)