PepPred: pMHC Conformation Similarity Predictor

Pantula, Ramamurty; Lu, Tianyu; Wang, Sean; Liang, Tianjian; Huang, Possu; Sgourakis, Nikolaos

doi:10.5281/zenodo.20315909

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Published May 20, 2026 | Version v1

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PepPred: pMHC Conformation Similarity Predictor

1. Children's Hospital of Philadelphia
2. Stanford University
3. University of Pennsylvania

This repository contains required packages and scripts for PepPred, a pMHC conformational similiarty predictor.

Model parameters can be downloaded from: https://zenodo.org/records/20076767.

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peppred.zip

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Copyright (c) 2026 The Children's Hospital of Philadelphia and Stanford University. All rights reserved. Academic and Non-Commercial Use License Permission is granted, free of charge, to any academic institution, researcher, or individual to use, copy, modify, and distribute this software for non-commercial research and educational purposes, subject to the following conditions: 1. The above copyright notice and this permission notice shall be included in all copies or substantial portions of the software. 2. Any publication resulting from use of this software must cite: Blackson W, Small EL, Sun SM, Shinde O, Pantula R, Wang SJ, Rotsides P, Du H, Sun Y, Hwang D, Wang CS, Lu T, Laskawy E, Kapoor R, Want MY, June CH, Young RM, Maris JM, Huang PS, Sgourakis NG. "A generalizable system for antigenic peptide targeting across HLA-I allotypes." bioRxiv (2026). https://doi.org/10.64898/2026.05.21.726655 3. Commercial use, including use by for-profit entities or use in connection with any commercial product or service, is strictly prohibited without a separate written license agreement. For commercial licensing inquiries, contact: Children's Hospital of Philadelphia Technology Transfer: Cassie M. Tran | TRANCM@chop.edu Stanford Office of Technology Licensing: Eileen Lee | eileen.lee@stanford.edu THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND.
Copyright: Copyright (c) 2026 The Children's Hospital of Philadelphia and Stanford University Licensed for academic and non-commercial use only. Commercial use requires a separate license. See LICENSE file for details.

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Created: May 20, 2026
Modified: June 19, 2026

PepPred: pMHC Conformation Similarity Predictor

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Files

peppred.zip

Files (27.7 MB)