Published July 22, 2026
| Version v2
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PepPred: pMHC Conformation Similarity Predictor
Authors/Creators
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1.
Children's Hospital of Philadelphia
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2.
Stanford University
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3.
University of Pennsylvania
Description
PepPred Structural Similarity Predictor
PepPred predicts structural similarity for 9-mer peptide antigens across HLA alleles. Methods related to this repository can be found in this manuscript: https://www.biorxiv.org/content/10.64898/2026.05.21.726655v1.full.
Runtime Options
There are 2 .zip folders given here which provide alternate options for running the PepPred predictor on your device. The "Unified-Scheduler" is a flexible installation which can be ran on a single workstation or be ran in parallel through SLURM job scheduling. The "Parallel" repository only offers support for SLURM based-job scheduling and is not capable of changing submission modes between runs. Download your preffered runtime option and extract the respective .zip file on your device to get started.
Instructions and Manual
Please refer to the attached README.md files for each respective repository for installation and usage instructions. LICENSE files are included within the Zenodo repository page as well as within each installation zip.
Parameters
PepPred relies on parameters and weight files that are stored in this https://zenodo.org/uploads/21497525 repository.