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Published December 12, 2016 | Version v1.0.0-M5
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ohnosequences/mg7: mg7 v1.0.0-M5

  • 1. @era7bio, @ohnosequences
  • 2. @era7bio @ohnosequences @bio4j
  • 3. ohnosequences!, Era7 Bioinformatics
  • 4. Gitter

Description

This milestone doesn't add many new features, but rather focuses on the internal code improvements and testing with a new reference database and several datasets. Here are the main changes since the v1.0-M4 release:

  • #71, #113: BLAST output filtering based on the maximum pident is now configurable
  • #112: Breaking changes to the way MG7 pipelines are defined and used in the user code: thanks to the improvements in Loquat user doesn't need to write boilerplate code to define an MG7 pipeline.
  • #107, #63: Stats and Summary steps are removed from the pipeline
  • #84, #96, #97, #98, #99: Global code review and refactoring
  • #78: Switched to the CSV format for all tables
  • #95: Bio4j taxonomy-related code is now in a separate project: ohnosequences/ncbitaxonomy
  • #86, #102 : Added Illumina and Pacbio BEI mock communities as test pipelines

See the full list of pull requests merged in this release in the v1.0-M4 milestone.

Files

ohnosequences/mg7-v1.0.0-M5.zip

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