Published December 12, 2016
| Version v1.0.0-M5
Software
Open
ohnosequences/mg7: mg7 v1.0.0-M5
- 1. @era7bio, @ohnosequences
- 2. @era7bio @ohnosequences @bio4j
- 3. ohnosequences!, Era7 Bioinformatics
- 4. Gitter
Description
This milestone doesn't add many new features, but rather focuses on the internal code improvements and testing with a new reference database and several datasets. Here are the main changes since the v1.0-M4 release:
- #71, #113: BLAST output filtering based on the maximum
pident
is now configurable - #112: Breaking changes to the way MG7 pipelines are defined and used in the user code: thanks to the improvements in Loquat user doesn't need to write boilerplate code to define an MG7 pipeline.
- #107, #63: Stats and Summary steps are removed from the pipeline
- #84, #96, #97, #98, #99: Global code review and refactoring
- #78: Switched to the CSV format for all tables
- #95: Bio4j taxonomy-related code is now in a separate project: ohnosequences/ncbitaxonomy
- #86, #102 : Added Illumina and Pacbio BEI mock communities as test pipelines
See the full list of pull requests merged in this release in the v1.0-M4 milestone.
Files
ohnosequences/mg7-v1.0.0-M5.zip
Files
(10.7 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/ohnosequences/mg7/tree/v1.0.0-M5 (URL)