There is a newer version of the record available.

Published March 20, 2026 | Version v2.2.2
Software Open

gustaveroussy/sopa: v2.2.2

Authors/Creators

  • 1. Cure51 and Gustave Roussy Institute
  • 2. CentraleSupélec
  • 3. GénomiqueENS
  • 4. @quadbio
  • 5. Theodo GovTech
  • 6. MSK
  • 7. @ScilifelabDataCentre

Description

Added

  • Added CI for MacOS and Windows by @alihamraoui in https://github.com/gustaveroussy/sopa/pull/391
  • Add support for local StarDist models by @alihamraoui in https://github.com/gustaveroussy/sopa/pull/392
  • Add scene and timepoint support to bioio reader by @alihamraoui in https://github.com/gustaveroussy/sopa/pull/395
  • Add tiffslide>=3.0.0 (which supports zarr v3) in the wsi extra, and use as a default backend for sopa.io.wsi

Changed

  • Aggregation refactoring by @alihamraoui in https://github.com/gustaveroussy/sopa/pull/401. Channel aggregation now returns an AnnData object. Can choose not to drop cells in sopa.aggregate.

Fixed

  • Fixed ome-zarr issue when writing to disk https://github.com/gustaveroussy/sopa/issues/400

New Contributors

  • @alihamraoui made their first contribution in https://github.com/gustaveroussy/sopa/pull/391

Full Changelog: https://github.com/gustaveroussy/sopa/compare/v2.2.1...v2.2.2

Files

gustaveroussy/sopa-v2.2.2.zip

Files (16.1 MB)

Name Size Download all
md5:8f9fea0661e3a474da127f7b78a9f0ba
16.1 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/gustaveroussy/sopa/tree/v2.2.2 (URL)

Software

Repository URL
https://github.com/gustaveroussy/sopa