Published May 29, 2026 | Version v2.2.7
Software Open

prism-oncology/sopa: v2.2.7

Authors/Creators

  • 1. Cure51 and Gustave Roussy Institute
  • 2. CentraleSupélec
  • 3. GénomiqueENS
  • 4. @quadbio
  • 5. Theodo GovTech
  • 6. Institute for Regeneration and Repair
  • 7. MSK
  • 8. @ScilifelabDataCentre

Description

What's Changed

  • Support visium-hd for snakemake by @quentinblampey in https://github.com/prism-oncology/sopa/pull/417
  • Unpin ome-zarr by @quentinblampey in https://github.com/prism-oncology/sopa/pull/422
  • Enable using a scale>0 in staining-based segmentation by @quentinblampey in https://github.com/prism-oncology/sopa/pull/423
  • Sopa's Docker images are deprecated and will no longer be released. Instead, you can access them from biocontainers or seqera.

Full Changelog: https://github.com/prism-oncology/sopa/compare/v2.2.6...v2.2.7

Files

prism-oncology/sopa-v2.2.7.zip

Files (16.1 MB)

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md5:1be9fe25ba5509b61bc54513006dbfad
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Additional details

Related works

Is supplement to
Software: https://github.com/prism-oncology/sopa/tree/v2.2.7 (URL)

Software

Repository URL
https://github.com/prism-oncology/sopa