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Published March 11, 2026 | Version 0.8.2
Software Open

constantinpape/torch-em: 0.8.2

Authors/Creators

  • 1. University Goettingen
  • 2. University of Göttingen
  • 3. @kreshuklab
  • 4. EMBL/University Heidelberg
  • 5. University of Warsaw, Faculty of Mathematics, Informatics, and Mechanics
  • 6. Science For Life Laboratory

Description

What's Changed

  • Fix SAM2 model imports by @anwai98 in https://github.com/constantinpape/torch-em/pull/586
  • Add EVICAN dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/587
  • Add ENSeg data by @anwai98 in https://github.com/constantinpape/torch-em/pull/588
  • Add PhMamm dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/589
  • Add BALF data by @anwai98 in https://github.com/constantinpape/torch-em/pull/590
  • Add microbeSEG data by @anwai98 in https://github.com/constantinpape/torch-em/pull/591
  • Add LSM Mouse Embryo dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/592
  • Add Drosophila Wing Disc data by @anwai98 in https://github.com/constantinpape/torch-em/pull/593
  • Add OocyteSeg data by @anwai98 in https://github.com/constantinpape/torch-em/pull/594
  • Add YeastCellSeg dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/595
  • Add BCCD data by @anwai98 in https://github.com/constantinpape/torch-em/pull/597
  • Add LPC NucSeg dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/598
  • Add MitoEMv2 dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/596
  • Add Mucic datasets by @anwai98 in https://github.com/constantinpape/torch-em/pull/600
  • Add BMGD dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/601
  • Add MEDUSSA data by @anwai98 in https://github.com/constantinpape/torch-em/pull/602
  • Add YeastSAM data by @anwai98 in https://github.com/constantinpape/torch-em/pull/603
  • Add YeastMS dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/604
  • Ad SLIMIA dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/605
  • Add MorphoNet dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/606
  • Add NucMorph data by @anwai98 in https://github.com/constantinpape/torch-em/pull/607
  • Add XPRESS data by @anwai98 in https://github.com/constantinpape/torch-em/pull/608
  • Add SynthMT dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/610
  • Minor fix to filepaths for dataset check scripts by @anwai98 in https://github.com/constantinpape/torch-em/pull/612
  • Add PanopTILs dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/614
  • Fix PUMA class id parsing by @anwai98 in https://github.com/constantinpape/torch-em/pull/613
  • Update PUMA data version by @anwai98 in https://github.com/constantinpape/torch-em/pull/611
  • Minor fix to CVZ label processing to avoid redundant progress bar runs by @anwai98 in https://github.com/constantinpape/torch-em/pull/615
  • Minor updates to CVZ fluo to return prepared filepaths by @anwai98 in https://github.com/constantinpape/torch-em/pull/616
  • Fix checksums and minor channel arrangement for AxonDeepSeg by @anwai98 in https://github.com/constantinpape/torch-em/pull/618
  • Add CellposeSAM ViT backbone by @anwai98 in https://github.com/constantinpape/torch-em/pull/620
  • Add support for pre_label_transform for expected sampler validation by @anwai98 in https://github.com/constantinpape/torch-em/pull/621
  • Update CellMap data processing with clipped padding by @lufre1 in https://github.com/constantinpape/torch-em/pull/622
  • Add DenseCell data by @anwai98 in https://github.com/constantinpape/torch-em/pull/623
  • Add WAENet data by @anwai98 in https://github.com/constantinpape/torch-em/pull/624
  • Made changes to Rescale to handle both int and float data by @stmartineau99 in https://github.com/constantinpape/torch-em/pull/625
  • Add fafb nucleus segmentation dataset by @constantinpape in https://github.com/constantinpape/torch-em/pull/628
  • Add microns nuclei dataset by @constantinpape in https://github.com/constantinpape/torch-em/pull/629
  • Fixed correct initialization of validation loader in FixMatch model by @okorch in https://github.com/constantinpape/torch-em/pull/630
  • Bump version by @anwai98 in https://github.com/constantinpape/torch-em/pull/631

New Contributors

  • @stmartineau99 made their first contribution in https://github.com/constantinpape/torch-em/pull/625
  • @okorch made their first contribution in https://github.com/constantinpape/torch-em/pull/630

Full Changelog: https://github.com/constantinpape/torch-em/compare/0.8.1...0.8.2

Files

constantinpape/torch-em-0.8.2.zip

Files (5.4 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/constantinpape/torch-em/tree/0.8.2 (URL)

Software

Repository URL
https://github.com/constantinpape/torch-em