Published June 2, 2026 | Version 0.9.0
Software Open

constantinpape/torch-em: 0.9.0

Authors/Creators

  • 1. University Goettingen
  • 2. University of Göttingen
  • 3. @kreshuklab
  • 4. EMBL/University Heidelberg
  • 5. University of Warsaw, Faculty of Mathematics, Informatics, and Mechanics
  • 6. Science For Life Laboratory

Description

Important: This release changes upstream dependencies to make torch_em pip-installable. This may change some behavior or introduce bugs.

What's Changed

  • Add more linting fixes across new submodules by @anwai98 in https://github.com/constantinpape/torch-em/pull/672
  • Add BBBC030, Glioma C6, MorphoSeg and IDR0095 datasets by @anwai98 in https://github.com/constantinpape/torch-em/pull/674
  • Add GlySac dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/677
  • Add HEST dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/678
  • Added storage in .h5 files in a parallelized pipeline by @titusgriebel in https://github.com/constantinpape/torch-em/pull/673
  • More changes to SegPath for dataloading by @anwai98 in https://github.com/constantinpape/torch-em/pull/679
  • Fix geopandas df loading. by @titusgriebel in https://github.com/constantinpape/torch-em/pull/681
  • Add Synapseweb Hippocampus data by @anwai98 in https://github.com/constantinpape/torch-em/pull/683
  • Add PCNS dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/682
  • Add Orion CRC dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/675
  • Minor fixes to ORION CRC data preprocessing by @anwai98 in https://github.com/constantinpape/torch-em/pull/684
  • Add LICONN dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/687
  • Pin python version in docs CI by @anwai98 in https://github.com/constantinpape/torch-em/pull/689
  • Add MICRONS dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/688
  • Extend cremi data to support padded volumes by @anwai98 in https://github.com/constantinpape/torch-em/pull/690
  • Add NISB data by @anwai98 in https://github.com/constantinpape/torch-em/pull/691
  • Add MouseCC data by @anwai98 in https://github.com/constantinpape/torch-em/pull/692
  • Add Hydra Vulgaris dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/693
  • Add Wildenberg by @anwai98 in https://github.com/constantinpape/torch-em/pull/694
  • Add ZebraFinch dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/695
  • Add ProbTEM data by @anwai98 in https://github.com/constantinpape/torch-em/pull/698
  • Update ProbTEM comments by @anwai98 in https://github.com/constantinpape/torch-em/pull/699
  • Add Hemibrain data by @anwai98 in https://github.com/constantinpape/torch-em/pull/700
  • Add MANC dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/701
  • Add FAFB data by @anwai98 in https://github.com/constantinpape/torch-em/pull/703
  • Add Human Cortex H01 dataset by @anwai98 in https://github.com/constantinpape/torch-em/pull/704
  • Refactor to use bioimage-cpp instead of vigra, nifty, and affogato by @constantinpape in https://github.com/constantinpape/torch-em/pull/702
  • Add workflows for PyPI publishing by @constantinpape in https://github.com/constantinpape/torch-em/pull/705
  • Bump version by @constantinpape in https://github.com/constantinpape/torch-em/pull/706

Full Changelog: https://github.com/constantinpape/torch-em/compare/0.8.3...0.9.0

Files

constantinpape/torch-em-0.9.0.zip

Files (5.6 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/constantinpape/torch-em/tree/0.9.0 (URL)

Software

Repository URL
https://github.com/constantinpape/torch-em