Published December 10, 2025 | Version 2025_12
Software Open

imgag/ngs-bits: 2025_12

Authors/Creators

  • 1. Institute of Medical Genetics and Applied Genomics
  • 2. Institut für Medizinische Genetik und Angewandte Genomik
  • 3. @GC-HBOC @imgag
  • 4. University of Tübingen
  • 5. @MHH-Humangenetik
  • 6. Avera Cancer Institute

Description

Note: This will be the last release with Qt5 support!

Changes:

  • NGSDAddVariantsGermline: No longer import entire variant consequence. Now imports only gene name, transcript ID, variant type and impact.
  • CnvFilterAnnotations: Updated filters.
  • SvFilterAnnotations: Updated filters.
  • VariantQC: Added parameter support for dbSNP IDs from INFO entry RS in addition to INFO entry CSQ.
  • VcfAnnotateFromVcf: Added parameter -hts_version.
  • VcfBreakMulti: Implemented support for FORMAT and INFO fields of type G.
  • new tool: BedToEpigen
  • updates for Qt6 (mainly in GSvar)
  • NGSD:
    • sequencing_run: added flowcell types
    • report_configuration_variant: added fields: exclude_hit2_missing, exclude_gus, exclude_used_other_var_type
    • report_configuration_cnv: added fields: exclude_hit2_missing, exclude_gus, exclude_used_other_var_type
    • report_configuration_sv: added fields: exclude_hit2_missing, exclude_gus, exclude_used_other_var_type
    • added table somatic_snv_callset

Full Changelog at: https://github.com/imgag/ngs-bits/compare/2025_09...2025_12

Note: Please do not use the auto-generated 'Source code' packages - they will not work!

Files

imgag/ngs-bits-2025_12.zip

Files (267.5 MB)

Name Size Download all
md5:c2357f990075848e680f9e4340cb007a
267.5 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/imgag/ngs-bits/tree/2025_12 (URL)

Software

Repository URL
https://github.com/imgag/ngs-bits