Published November 4, 2025
| Version v1
Dataset
Open
Data necessary to run differential gene expression and cell type deconvolution of bulk-RNA-seq data performed in atherosclerotic human carotid artery samples
Authors/Creators
- 1. Helmholtz Zentrum München
Description
- Counts_batch_corrected.rds: Batch corrected bulk-rNA-seq counts
- GSE159677_filtered_batch_corrected_clustered_annotated.rds: Annotated scRNA-seq dataset downloaded from GEO (GSE159677), used for cell type deconvolution.
- sample_maifest_with_pat_id_conversion.csv: Dataframe of patient metadata.
Files
data_for_DGE_and_deconvolution.zip
Files
(1.1 GB)
| Name | Size | Download all |
|---|---|---|
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md5:1c5472214f907ca701545f3f4cad6877
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1.1 GB | Preview Download |
Additional details
Related works
- Is supplement to
- Dataset: 10.1038/s41467-025-67679-4 (DOI)