Published May 5, 2016 | Version v1
Software Open

Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.

Creators

  • 1. Laboratory of Pharmaceutical Microbiology, Ghent University, Ghent, Belgium
  • 2. Core Unit Systems Medicine, University of Würzburg, Germany
  • 3. Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium
  • 4. Institute for Molecular Infection Biology, University of Würzburg, Germany

Description

These shell scripts are part of the publication "Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315" by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3).

Please generate a folder "FASTQ" and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following:

  • RNA_BF1_minus_TEX.fq.bz2
  • RNA_BF1_plus_TEX.fq.bz2
  • RNA_BF2_minus_TEX.fq.bz2
  • RNA_BF2_plus_TEX.fq.bz2

To perform the analysis run

./run_analysis.sh

Please make sure that the software is installed and the variable are set accordingly in run_analysis.sh. To install the required software you can use

./install_software.sh

Files

Files (3.5 kB)

Additional details

Related works

Is supplement to
10.1186/s12864-015-1993-3 (DOI)
PMID:25646441 (PMID)