Published September 25, 2025 | Version 2025_09
Software Open

imgag/ngs-bits: 2025_09

Creators

  • 1. Institute of Medical Genetics and Applied Genomics
  • 2. Institut für Medizinische Genetik und Angewandte Genomik
  • 3. @GC-HBOC @imgag
  • 4. University of Tübingen
  • 5. @MHH-Humangenetik
  • 6. Avera Cancer Institute

Description

Changes:

  • new tool: BamInfo
  • RohHunter: changed default of var_min_q to 20 for ONT long-read support.
  • UpdHunter: changed default of var_min_q to 20 for ONT long-read support.
  • BedCoverage: added parameter -skip_mismapped
  • NGSDImportEnsembl: updated database download URLs (Ensembl 115)
  • NGSDImportHGNC: updated database download URLs
  • NGSDImportHPO: updated database download URLs
  • NGSDImportORPHA: updated database download URLs
  • Improved speed of CRAM reading and writing significantly
  • general bug fixes and more Qt6 adaptations
  • NGSD:
    • gene_transcript table: added is_gencode_primary boolean
    • project table: added matchmaking enum

Full Changelog at: https://github.com/imgag/ngs-bits/compare/2025_07...2025_09

Note: Please do not use the auto-generated 'Source code' packages - they will not work!

Files

imgag/ngs-bits-2025_09.zip

Files (208.6 MB)

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md5:cb79d09a64b1d9dabf2960367bce58f2
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Additional details

Related works

Is supplement to
Software: https://github.com/imgag/ngs-bits/tree/2025_09 (URL)

Software

Repository URL
https://github.com/imgag/ngs-bits