Published September 4, 2025
| Version v2
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Test Data for Bulk RNA-seq Pipeline 2025
Description
Here are the test data, containing six samples of different conditions, for bulk RNA-seq quantification pipeline 2025.
| Format | Library Type | Phred Encoding | Species | Number of Reads | Preparation | |
| sample1 | FASTQ | Paired-end | Phred+33 | human | 19,410,373 | Downsampled from real data |
| sample2 | FASTQ | Single-end | Phred+33 | mouse | 16,005,450 | Downsampled from real data |
| sample3 | FASTQ, multiple lanes | Paired-end | Phred+33 | human | 19,410,373 | Split by lane from sample1 |
| sample4 | FASTQ, multiple lanes | Single-end | Phred+33 | mouse | 16,005,450 | Split by lane from sample2 |
| sample5 | BAM/SAM (to genome) | Paired-end | Phred+33 | human | 13,856,075 | Downsampled from real data |
| sample6 | BAM/SAM (to transcriptome) | Single-end | Phred+33 | mouse | 13,533,162 | Downsampled from real data |
Files
sample1.zip
Files
(8.9 GB)
| Name | Size | Download all |
|---|---|---|
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md5:cc4c16fdcb152c2d2518e94facf70d98
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2.0 GB | Preview Download |
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md5:6128ae80588cf407591407641fe18c52
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448.7 MB | Preview Download |
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md5:33ccf0ef0f3dc3db22ae56b95dddde57
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2.0 GB | Preview Download |
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md5:23b087a4d488e98a3fd3ee0b1915879c
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462.2 MB | Preview Download |
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md5:e422326eb5b6cb6ead4c918166f53e6f
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3.0 GB | Preview Download |
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md5:29c26f93b03879d35902909b4936c98a
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978.7 MB | Preview Download |
Additional details
Related works
- Is part of
- Dataset: https://jyyulab.github.io/bulkRNAseq_quantification_pipeline/#bulk-rna-seq-quantification-pipeline-2025 (URL)
Dates
- Created
-
2025-09-09
Software
- Repository URL
- https://github.com/jyyulab/bulkRNAseq_quantification_pipeline
- Programming language
- Perl, R, Shell