Published August 26, 2025
| Version 2.0.0
Journal article
Open
Characterization of flexible RNA binding by tandem RNA recognition motifs through integrative ensemble modelling
Creators
- 1. ETH Zürich, Department of Biology
- 2. ETH Zürich, Department of Chemistry and Applied Biosciences
- 3. ETH Zurich, Department of Chemistry and Applied Biosciences
Description
Primary and processed experimental data, MMMx modelling and analysis scripts, and ensemble models for a study on RNA binding to the tandem RNA-recongnition motifs of Serine/arginine-rich splicing factor 1 (SRSF1). The set comprises the following data and scripts:
- Primary DEER (EPR) data for the free protein and for complexes with RNA UCAUUGGAU as well as UGGAUUUUUCAU
- Processed DEER data (distance distributions)
- RigiFlex ensemble modelling scripts for the free protein and the two complexes to be run with MMMx
- EnsembleFit (MMMx) scripts, including NMR paramagnetic relaxation enhancement (PRE) restraints
- EnsembleAnalysis scripts (MMMx) for analyzing the incomplete disorder-to-order transitions from free SRSF1 to the two RNA complexes
- ensemble models for the free protein and for complexes with RNA UCAUUGGAU as well as UGGAUUUUUCAU obtained with RigiFlex in MMMx
- ensemble models for the free protein and for complexes with RNA UCAUUGGAU as well as UGGAUUUUUCAU obtained by a CYANA multistate computation followed by ensemble reweighting by MMMx
- ensemble models obtained with different approaches for generating the initial conformer pool and different reweighing procedures
- superensembles obtained by jackknife resampling
Files
SRSF1_free_AF3.zip
Files
(400.2 MB)
Name | Size | Download all |
---|---|---|
md5:f7b9e13699eb0dcc509b40c979caba82
|
776.9 kB | Preview Download |
md5:749e54c86731c4e6f8f3d6b7e5ba20a2
|
50.1 MB | Preview Download |
md5:0098144e0d8cf1585be4a3cb26f1975b
|
4.9 MB | Preview Download |
md5:4e350ecb22a810150a7b02c4888146ed
|
69.5 MB | Preview Download |
md5:9850895e5eca2ceace4b5b71d03c8ba4
|
2.3 MB | Preview Download |
md5:292526e7bd335ff8d43134066b49821e
|
2.4 MB | Preview Download |
md5:6b8d0014321811206e73f6faf2347104
|
1.1 MB | Preview Download |
md5:bb74c75d4fffb9b2b94a021385bfd312
|
1.8 MB | Preview Download |
md5:e5e1080e61c22f2ff037953dbd4b4891
|
41.3 MB | Preview Download |
md5:19583b74e25da704b341c03d045af83d
|
1.9 MB | Preview Download |
md5:b5e27aadb2f182d599808d388885b3f6
|
3.0 MB | Preview Download |
md5:ea09bfb365f68bd677736cb4bb46eba2
|
841.7 kB | Preview Download |
md5:e1878efc8f1418e06636027b66b23568
|
57.9 MB | Preview Download |
md5:74e466d065de30b4aee3132fa1be6034
|
2.3 MB | Preview Download |
md5:70bf768d8eb3ec9f02204ffaf72a10de
|
48.9 MB | Preview Download |
md5:bea27d5e4ea1334757b629181ce4964e
|
1.0 MB | Preview Download |
md5:8a13191218078330c92e980336a51098
|
3.0 MB | Preview Download |
md5:d4cc1572e821d941a0d97911add28424
|
2.9 MB | Preview Download |
md5:e00ca39a3838eb85f9fed065af26744a
|
56.3 MB | Preview Download |
md5:2b71fe455058bc592f8448f968569964
|
1.8 MB | Preview Download |
md5:45ffa793381bc21920239830eccfe6ee
|
43.3 MB | Preview Download |
md5:2542fcb9ef857eb88260e5e2743c89fd
|
418.1 kB | Preview Download |
md5:1bab325980d12a91e5cdfea736dceaeb
|
2.4 MB | Preview Download |
Additional details
Funding
- Swiss National Science Foundation
- New types of information from pulsed electron paramagnetic resonance spectroscopy 200020_188467
- Swiss National Science Foundation
- Role of Disordered Regions in RNA-Binding Proteins for Function and Pathology CRSII5_170976
Software
- Repository URL
- https://github.com/gjeschke/MMMx
- Programming language
- MATLAB
- Development Status
- Active