Py-ualg/biohap: Zenodo deployment

Microbiome Analysis of Amplicon Sequencing

• To view the tutorial locally, open /docs/index.html in your browser.

• The index page contains link to the online version of the tutorial too.

• /assets folder contains:

  • Introductory presentation: assets/250507_taires/Workshop_Qiime2_Presentation.pdf
  • Raw data files: SampleX.zip etc.
  • QIIME2 manifest file: Manifest_file_species.txt
  • Shortcut files for MicrobiomeAnalyst (MA): If you have trouble running QIIME2, you can use these pre-generated results tables as input for MA, ASV_table_MA.txt, taxonomy_MA.txt, and metadata_MA.txt.
  • Conversion bash scripts to format outputs of QIIME2 to conform to MA inputs, convert_ASV_taxonomy.sh, convert_ASV_abundaces.sh