There is a newer version of the record available.

Published December 13, 2024 | Version v2.4.0
Software Open

epi2me-labs/wf-single-cell: v2.4.0

Authors/Creators

  • 1. Oxford Nanopore Technologies
  • 2. @nanoporetech
  • 3. @Birkbeck
  • 4. @nanoporetech, @epi2me-labs

Description

Changed

  • Output filenames to include sample alias.
  • Output filename formating standardised.
  • In the report 'reads' now refers to number of reads not subreads.
  • kit and expected_cells (visium excepted) are now required. Either as individual parameter or defined per sample via the single_cell_sample_sheet.
  • Reconcile wf with template v5.3.3.

Added

  • Minimum read quality filter.
  • 10x 5prime:v3 support.
  • Barcode statistics output file.

Files

epi2me-labs/wf-single-cell-v2.4.0.zip

Files (32.5 MB)

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md5:ee8f4f1500784043a23a68f010902102
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Additional details

Related works

Is supplement to
Software: https://github.com/epi2me-labs/wf-single-cell/tree/v2.4.0 (URL)

Software

Repository URL
https://github.com/epi2me-labs/wf-single-cell