Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites

Dataset Description - Version 1

This dataset contains:

Network files:

• mGRN.csv (12.33 MB) - Tissue-specific networks (root, ear, tassel, seed, stem, leaf)

Transcription factor data:

• 405_TFs_motif.rar (163.28 KB) - Transcription factor motif data
• 513_TFs_peak_filter files - Peak files for 513 transcription factors (before and after regulatory region filtering)

Functional analysis:

• GO term enrichment results (17.02 MB)
• Regulatory region analysis (14.24 MB)

Resources:

• Analysis code: https://github.com/Huo-qiang/accuracy-enhanced-maize-gene-regulatory-network-mGRN
• IGV browser: https://dap-seq.maize-endosperm.cn/
• Raw data:
  • https://ngdc.cncb.ac.cn/gsa/browse/CRA022036
  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201701

⚠️ Note: An updated version (v2) with additional ChIPSeeker annotation files is available at: https://doi.org/10.5281/zenodo.16029269

Citation:
If you use the data or code, please cite: Huo Q., Zhang Z., Zhang K., Wang Q., Zhang W., Ye X., Lyu Q., Galbraith D.W., Ma Z., and Song R. (2025). Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites. Mol. Plant. 18, 1777–1798. doi: https://doi.org/10.1016/j.molp.2025.08.009