Published July 17, 2025
| Version 2.0.0
Dataset
Open
Chromosome-level genome assembly of the sponge Halisarca dujardinii
Creators
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Zubarev, Vasiliy
(Researcher)1, 2
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Cherkasov, Alexander
(Researcher)1
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Sidorov, Leonid
(Researcher)1
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Adameyko, Kim
(Researcher)3
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Finoshin, Alexander
(Researcher)3
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Ryabova, Alina
(Researcher)4, 5
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Kashtanova, Anastasia
(Researcher)6
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Gazizova, Guzel
(Researcher)4
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Gogoleva, Natalia
(Researcher)7, 8
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Burakov, Anton
(Researcher)9
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Kozlova, Olga
(Researcher)4
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Shagimardanova, Elena
(Researcher)1, 10
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Gusev, Oleg
(Researcher)4
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Mikhailov, Kirill
(Researcher)9, 11
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Kravchuk, Oksana
(Researcher)3
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Lyupina, Yulia
(Researcher)3
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Khrameeva, Ekaterina
(Supervisor)1
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1.
Skolkovo Institute of Science and Technology
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2.
Institute of Oceanology. PP Shirshov Russian Academy of Sciences
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3.
Koltzov Institute of Developmental Biology
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4.
Kazan Federal University
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5.
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
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6.
Lomonosov Moscow State University
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7.
Universität Innsbruck
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8.
Kazan Institute of Biochemistry and Biophysics
- 9. A.N. Belozersky Institute of Physical and Chemical Biology, Lomonosov Moscow State University
- 10. Life Improvement by Future Technologies Institute (121205 Moscow, Russian Federation)
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11.
Institute for Information Transmission Problems
Description
First choromosome-level genome assembly of the sponge Halisarca dujardinii (well-known for its unusual ability of regeneration even from single cell suspension). The dataset includes genome assembly, mitochondrion, annotations of repeats, protein-coding genes, tRNAs, rRNAs, mitochondrial genome annotation. As well, we provide functional annotation of predicted peptides. This functional annotation includes results of BLASTP and BLASTX searches against SwissProt database, PFAM domains, homology prediction by EggNOG-mapper, signal peptides and transmembrane domains. Also the repository includes the code used to create the dataset. For more detailed information see "readme" and "annotation usage notes" files included in the repository.
Files
Halisarca_dujardinii_chromosome_level_assembly.zip
Files
(109.6 MB)
| Name | Size | Download all |
|---|---|---|
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md5:a2e3b51db286ef7a75d25c36c92ed133
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Additional details
Related works
- Continues
- Journal article: 10.1371/journal.pone.0228722 (DOI)
- Journal article: 10.1093/nargab/lqaf071 (DOI)
- Dataset: 10.5281/zenodo.14981465 (DOI)
Funding
- Russian Science Foundation
- Institute of Developmental Biology of the Russian Academy of Sciences Government Basic Research Program 0088-2024-0009
- Russian Science Foundation
- Система гомеостаза клеточного протеома у базальных животных 25-14-00131
Dates
- Created
-
2025-05-30
Software
- Repository URL
- https://github.com/VasiliyZubarev/HalisarcaGenome
- Programming language
- Shell, R
- Development Status
- Active