Published July 15, 2025
| Version v1
Dataset
Open
Genome Annotation of Haplotig 1 and Haplotig 2 of Sideroxylon spinosum L.
-
1.
University of Fribourg
- 2. Swiss Institute of Bioinformatics
Description
Genome Annotation of Sideroxylon spinosum L. Haplotigs 1 and 2.
Genome annotation was performed with BRAKER3 (Gabriel et al., 2023), using proteomic and RNA-seq data. A set of seven different proteomes (Medicago truncatula, Vitellaria paradoxa, S. dulcificum, Diospyros oleifera, Camellia sinensis and Rhododendron henanense) were used as proteomic templates for gene prediction guided gene prediction. RNA-seq data from three Argan root samples (PRJEB60382) were quality-filtered with fastp and mapped using HISAT2 (Kim et al., 2019)
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