Published July 6, 2025
| Version v1
Dataset
Open
cartloader Vizgen MERSCOPE Starter Tutorial Results
Creators
Description
The repository is part of a cartloader public tutorial (https://seqscope.github.io/cartloader/vignettes/subregion_tutorials/merscope/) based on the Vizgen MERSCOPE mouse datase. It showcases how to use cartloader (https://seqscope.github.io/cartloader/) toolkit to analyze and convert spatial transcriptomics data into web-optimized, spatially indexed PMTiles for downstream analysis, interactive web visualization, and data sharing across platforms.
This repository provides PMTiles files for SGE dataset and its spatial factors from FICTURE analysis. These PMTiles files were generated using run_cartload2 from the cartloader toolkit.
Files
genes_bin_counts.json
Files
(247.4 MB)
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