Glutamine synthetase cryo-EM EMMIVox ensemble refinements
Description
This deposit contains molecular dynamics trajectory files (.xtc) and PDB model files (.pdb) generated using the EMMIVox ensemble refinement approach applied to cryo-electron microscopy (cryo-EM) maps of glutamine synthetase; specificially EMD-70845 (apo-filament), EMD-70841 (turnover filament), and EMD-70843 (turnover decamer). EMMIVox (https://doi.org/10.1371/journal.pcbi.1012180) is a Bayesian inference-based method designed to integrate cryo-EM data with atomistic and coarse-grained molecular dynamics simulations, enabling the determination of both high-quality single-structure models and structural ensembles that capture the conformational heterogeneity present in the experimental data.
Files
Files
(3.7 GB)
Name | Size | Download all |
---|---|---|
md5:7a0b3892eb17b91ddbf01286ded6aa34
|
1.8 GB | Download |
md5:ab1c0cd4fff71de78691347c79dadfdd
|
934.8 MB | Download |
md5:15e4567501743a5ce0869899e10d3587
|
999.7 MB | Download |
md5:6587f253c4ae9bc37272b4c153f57bc5
|
2.3 MB | Download |
md5:d0dd3ca3e8fec11a606ad4ac095cd260
|
2.3 MB | Download |
md5:07fc291098df8efa1fc396b46c84ba26
|
2.3 MB | Download |