CBASSED50: R package to process CBASS-derived PAM data

Version 0.2.0 - 2025-06-05

Major Changes

• Updated internal code and tests to work with the new required columns.
• Added zzz.R to handle .onLoad() behaviour.

File and Structure Updates

• Replaced outdated files in examples/outputs/.
• Updated example file structure to follow CRAN guidelines.
• Renamed demo .qmd files to tutorial.qmd.

Documentation

• Updated README.md with clearer examples and explanations.
• Re-rendered documentation using roxygen2.
• Fixed LaTeX rendering issues in help files (e.g., \eqn{} instead of Unicode symbols).

Build and Compatibility

• Updated DESCRIPTION file for CRAN compliance.
• Removed obsolete and unused files.

Example Data

• Updated existing example data.
• Added new example datasets for tutorials.

Full Changelog: https://github.com/reefgenomics/CBASSED50/compare/0.1.5.1...v0.2.0