Published June 2, 2025
| Version v0.2.0
Software
Open
OpenOmics/leafworker: v0.2.0
Description
leafworker (v0.2.0)
Feature: Add in a step to run IsoformSwitchAnalyzeR with or without covariates to find differential isoform usage/switching.
- Adding new rule to generate leafviz Rdata file.
- Adding new docker image with IsoformSwitchAnalyzeR dependencies.
- Adding docker image with ISA dependencies.
- Adding bam2fq step for running salmon, step to build salmon index, salmon-quant step, step to create a raw and normalized counts matrix, and a step to run ISA
- Adding quantify transcripts option to conditionally run IsoformSwitchAnalyzeR
Big fixes:
- Unset any R-related ENV vars related to system-level and user-level R package installations
- Updating renaming of col names for ISA sample sheet
Full Changelog: https://github.com/OpenOmics/leafworker/compare/v0.1.0...v0.2.0
Files
OpenOmics/leafworker-v0.2.0.zip
Files
(115.7 kB)
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md5:81e3d2699b29123f5d3a6726f029854f
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Additional details
Related works
- Is supplement to
- Software: https://github.com/OpenOmics/leafworker/tree/v0.2.0 (URL)
Software
- Repository URL
- https://github.com/OpenOmics/leafworker