Published April 30, 2025 | Version v1
Computational notebook Open

Tomographic Müller-polarimetric microscopy: reconstruction code

Creators

  • 1. ROR icon Paul Scherrer Institute
  • 2. ROR icon University of the West of Scotland
  • 3. École polytechnique fédérale de Lausanne, EPFL
  • 4. ROR icon Chalmers University of Technology
  • 5. ROR icon École Polytechnique Fédérale de Lausanne

Description

 
Code Description
These scripts correspond to the TMPM-MUMOTT artifacts (v2.1), enabling the reconstruction of 3D birefringence distributions from samples analyzed via tomographic Müller-polarimetric microscopy (TMPM).

Code Availability
The associated methodology and codes are detailed in the published article:
Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy
Compared to the initially submitted version, this release has been refactored for greater flexibility and fully integrated into the MUMOTT library (mumott — mumott documentation). It reflects the stable, peer-reviewed implementation at the time of publication and should be cited accordingly. The latest version of the code is maintained in the TMPM branch of the MUMOTT repository (Files · TMPM · Liebi Group / software / mumott · GitLab)
 
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Dependencies:
scipy, numpy, time, importlib, warnings, numba, h5py,mat73, matplotlib, skimage, typing, functools, plotly, tqdm

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Files

mumott-2.1-TMPM.zip

Files (30.3 MB)

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