Published October 18, 2023 | Version v1
Dataset Open

Dataset and code for "Evaluating the COVID-19 vaccination program in Japan, 2021 using the counterfactual reproduction number" in Scientific Reports 2023 Oct 18;13(1):17762. doi: 10.1038/s41598-023-44942-6.

Creators

  • 1. ROR icon Kyoto University

Description

- The dataset and R-code for the quoted article in Scientific Reports are provided. 

The datasets that are described either in the main text or supplemantary material and are the following:

File 1. Vaccination coverage by age and time (from vaccine registration system)

File 2. See below (not available)

File 3. Next generation matrix from fouth wave in Osaka prefecture

FIle 4 Google mobility data

File 5. Time series proportion of Delta variant out of screened SARS-CoV-2 viruses.

File 6. Consecutive holidays (dummy variables)

File 7. Cumulative vaccination coverage by age and time (with 7-day moving average)

File 8. Parameters for describing File 7 using a logistic curve.

Files 9, 10 and 11. Scenarios of vaccination program (i.e., early, late and young; described as the absolute numbers vaccinated)

-According to our national law, it is not accepted to share the surveillance data (raw data) other than the way that is publicly shared via periodicals published by the National Institute of Infectious Diseases such as Infectious Disease Weekly Reports (IDWR) which follows the Infectious Disease Control Law. The epidemiological dataset for research use is granted following the scheme of data sharing for third persons adhering to Infectious Disease Control Law. This would allow recovering File 2 by the audience. For that purpose, people need to obtain an approval by submitting an application document to the National Institute of Infectious Diseases, Japan Institute for Health Security. 
To access to the epidemiological data, we advise interested audience to apply for the sharing via above quoted link. 

Files

File1.VaccinationTable.csv

Files (374.9 kB)

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md5:da7625dee5aea79909b8af80237f59b5
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md5:4d25e28c85c474a50aa19045072a36d6
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