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Published April 10, 2025 | Version 0.1.4
Software Open

github.com/aofarrel/tree_nine/matUtils_extract

Creators

  • 1. University of California Santa Cruz

Description

# Extract This workflow uses `matUtils extract` to extract a subtree from an UShER-formatted protobuff (.pb) phylogenetic tree. The `samples_in_subtree` file must have the name of each sample that is to go into the subtree, one sample per line.

Files

github.com-aofarrel-tree_nine-matUtils_extract_0.1.4.zip

Files (7.4 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.15186279 (URL)
https://dockstore.org/workflows/github.com/aofarrel/tree_nine/matUtils_extract:0.1.4 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Faofarrel%2Ftree_nine%2FmatUtils_extract/versions/0.1.4/PLAIN-WDL/descriptor/extract_subtree.wdl (URL)