Published March 31, 2025 | Version v6
Dataset Open

ENCODE LR-RNA-seq models and expression values

Creators

Description

In this object are the following files:

 

  • filt_ab_tpm_mouse.tsv / filt_ab_tpm_human.tsv: Expression levels in TPM for each transcript in human and mouse
  • lr_mouse_library_data_summary.tsv / lr_human_library_data_summary.tsv: Metadata for each dataset in human and mouse
  • cerberus.gtf / mouse_cerberus.gtf: Transcript models in GTF format
  • human_ucsc_transcripts.gtf / mouse_ucsc_transcripts.gtf: Transcript models for transcripts that passed expression filtering (>= 1 TPM in at least one library; transcripts from known 
  • human_protein_summary.tsv / mouse_protein_summary.tsv: Summary of protein coding predictions, including ORF locations and NMD status

Files

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