Published April 23, 2025
| Version v1
Dataset
Open
HDMA bigwigs - Part 1
Creators
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Liu, Betty B.1
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Jessa, Selin1
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Kim, Samuel H.1
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Ng, Yan Ting2
- Higashino, Soon Il1
- Marinov, Georgi K.1
- Chen, Derek C.1
- Parks, Benjamin E.1
- Li, Li1
- Nguyen, Tri C.1
- Wang, Austin T.1
- Wang, Sean K.1
- Tan, Serena Y.1
- Kosicki, Michael3
- Pennacchio, Len A.3
- Ben-David, Eyal2
- Pasca, Anca M.1
- Kundaje, Anshul1
- Farh, Kyle K.H.2
- Greenleaf, William J.1
- 1. Stanford University
- 2. Illumina AI Lab
- 3. Lawrence Berkeley National Laboratory
Description
Bigwig tracks for each cell type in HDMA (Liu*, Jessa*, Kim*, Ng* et al, bioRxiv 2025). Includes the Macs2 p-value signal track for observed acessibility, the bias-corrected ChromBPNet-predicted accessibility, and base-resolution contribution scores. Predictions and contributions represent averages across folds per cell type. A detailed description of the main data types deposited on Zenodo can be found here.
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(49.1 GB)
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2025.04.30.651381 (DOI)