Published August 6, 2025
| Version 1.4
Dataset
Open
Easy genomic regions for short-read variant calling
Authors/Creators
Description
Panmask easy regions:
- pm151a.easy: excluding 151-mers occurring ≥1.01n times in the pangenome, where n is the number of genomes.
- pm151b.easy: further excluding low-complexity regions (LCRs) longer than 18bp identified by longdust
- pm401a.easy: 401-mers. Not well evaluated.
- pm401b.easy: excluding LCRs longer than 30bp
- *.longdust.bed.gz: LCRs generated by longdust v1.0 (sligtly different from the latest v1.2)
They exclude all assembly gaps and non-chromosomal contigs. See panmask for details.
Files
Files
(42.8 MB)
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md5:c396e2cfecf4684a584a5d5cccacc494
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10.1 MB | Download |
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md5:78ea118a3e97ab8c6a3dc51d3b02d45b
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2.4 MB | Download |
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md5:1e889d2805d5d2bf601b59cab253f475
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6.0 MB | Download |
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md5:6784264aefd34985180ecf137c8c7fa7
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706.1 kB | Download |
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md5:e1d0e7c5b11817bb47f34d0ad599c8cf
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2.4 MB | Download |
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md5:1eb1f16a92614907d89218922387344a
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10.0 MB | Download |
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md5:76ecce087dc66938dc6a91ab56cd588f
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2.3 MB | Download |
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md5:50062f59a43dab0b463bafcf3b59fc62
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6.0 MB | Download |
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md5:1047f01397bc96e72d8149ae0609826b
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667.9 kB | Download |
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md5:a730fa3ee2f07448eeb25d625a8859fd
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2.4 MB | Download |
Additional details
Related works
- Is derived from
- Dataset: 10.5281/zenodo.13948741 (DOI)
- Is described by
- Software: https://github.com/lh3/panmask (URL)