Genomics

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Published February 22, 2025 | Version 1.2
Dataset Open

Easy genomic regions for short-read variant calling

Authors/Creators

Description

Panmask easy regions:

  • pm151a.easy: excluding 151-mers occurring ≥1.01n times in the pangenome, where n is the number of genomes.
  • pm151b.easy: further excluding low-complexity regions ≥19bp identified by SDUST

They exclude all assembly gaps and non-chromosomal contigs. See panmask for details.

Files

Files (23.0 MB)

Name Size Download all
md5:78ea118a3e97ab8c6a3dc51d3b02d45b
2.4 MB Download
md5:0d1efde1ebd3ce3d8d49097530343d8a
9.2 MB Download
md5:76ecce087dc66938dc6a91ab56cd588f
2.3 MB Download
md5:69dd49bfc77b612a6c72b55a7111e4c9
9.1 MB Download

Additional details

Related works

Is derived from
Dataset: 10.5281/zenodo.13948741 (DOI)
Is described by
Software: https://github.com/lh3/panmask (URL)