Published November 14, 2018
| Version v1
Dataset
Open
Molecular dynamics simulations of lipid bilayers containing POPC and POPS (various mixtures) with ECC-lipids force field, and Na+ (K+) counterions
Creators
- 1. Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
Description
Classical molecular dynamics simulations of various mixtures of POPC:POPS lipid bilayers in water solution with only Na+ counterions (or with K+ counterions when noted with "_KCl" suffix).
ECC-lipids force field parameters used for lipids, SPC/E water model and ECC-ions, all parameters available at https://github.com/jmelcr/ecc_lipids
simulations performed with Gromacs 2018.0 (*.xtc files)
simulation length 1000 ns = 1 microsecond
temperature 298 K
Gromacs simulation setting is in the file npt_lipid_bilayer.mdp
Files
Files
(42.4 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:8d68a768bcb616a5061a32658c52a832
|
471.9 kB | Download |
|
md5:285fddaeee4ab27ea16364f2ee632dc0
|
1.4 MB | Download |
|
md5:a791d8a5d4a4108e09ce2f69d3f8c8b4
|
382 Bytes | Download |
|
md5:18ae929435dbaca23173041af0fc612c
|
629.5 kB | Download |
|
md5:867ac50aad6c3139f47e7e1111849807
|
3.5 GB | Download |
|
md5:7bf7d04c97d6335bc8cb13233ee8f895
|
471.9 kB | Download |
|
md5:dac8d3bf96a5122f8ee1013068d894b1
|
1.4 MB | Download |
|
md5:bcd9c3a907b9be386556c6a03e90281a
|
381 Bytes | Download |
|
md5:da2afd11e3a689d4b1d3fe48cf85132f
|
629.5 kB | Download |
|
md5:01e3432c3d33412f4fec74a4b3901dc9
|
3.5 GB | Download |
|
md5:e3e06d80c4c4700acfa91db2a8782244
|
782.0 kB | Download |
|
md5:fb58be921169538161432f8dcb7c02a5
|
2.2 MB | Download |
|
md5:5971d9a17c6658e660c5df6a017c9ace
|
386 Bytes | Download |
|
md5:0b76e9d387eada6717e3c6940ffa0100
|
991.2 kB | Download |
|
md5:fb47be1ed849340711b5c8f2627e2f0f
|
6.0 GB | Download |
|
md5:3a93d9142640dcb35e2542ee7aa54d6d
|
782.0 kB | Download |
|
md5:e88a84249c16764ae833663af8c294f5
|
2.2 MB | Download |
|
md5:790b92094b6ae8872dbc4aba3a6dbccf
|
384 Bytes | Download |
|
md5:a22e173f826619c8d826d5b128ffa9f9
|
991.2 kB | Download |
|
md5:aff22e3f1242ee5ddf9788085cba7393
|
5.9 GB | Download |
|
md5:b2e74dbe27c7a97a1683cc620c70fddd
|
451.7 kB | Download |
|
md5:7287def405ae28d7905d42110915b09e
|
1.3 MB | Download |
|
md5:9a3a7ae89ec27f31f31b4a83ed81867a
|
382 Bytes | Download |
|
md5:189738c287251fc1107a741f084fe3cb
|
606.0 kB | Download |
|
md5:af6af34c3f156afa6a07ff0240a4da92
|
3.4 GB | Download |
|
md5:8903491eb6d793de3614b11b300f7cf4
|
451.8 kB | Download |
|
md5:f816ff740e42d8e0cb32fc3cf38724e9
|
1.3 MB | Download |
|
md5:7ff021a3d547702c4eb78eafd9bfcc84
|
381 Bytes | Download |
|
md5:1d28610047aabbb6ea97c64f25e8fef3
|
606.0 kB | Download |
|
md5:08956c1940c5b01fe10228272bd804b5
|
3.4 GB | Download |
|
md5:cdaceda8e415a619c0762d8beb0920b6
|
490.3 kB | Download |
|
md5:3f02894692002d4450375153cd0d3ed9
|
1.4 MB | Download |
|
md5:d2da640f8218a7a389a3af0eeb3c48f5
|
382 Bytes | Download |
|
md5:3c8d00a01ecbdb53dd53db53c0ad7761
|
651.0 kB | Download |
|
md5:f3df3932b55f49e38e111711f273bf9b
|
5.8 GB | Download |
|
md5:c3e58778fea0282a9deba3cc5698a0bd
|
490.4 kB | Download |
|
md5:ab9218112d0320c7e272da73a1551324
|
1.4 MB | Download |
|
md5:2ffcde61981e0a4d6627ee4f994e0710
|
381 Bytes | Download |
|
md5:8379f3c2fe7579d944c416f0449874c2
|
651.0 kB | Download |
|
md5:a65b6806447b63c394d6f00a78c72b2c
|
3.7 GB | Download |
|
md5:3363d0bc76a7f1d53c7dfd19b995d5f7
|
481.7 kB | Download |
|
md5:03fbf7cf91e18e17f25355bfb8ba3576
|
1.4 MB | Download |
|
md5:97fa49c7dac201093e0edecc751fa1ba
|
314 Bytes | Download |
|
md5:bbedf33d61b8dce4ad0dae8cacf59970
|
604.0 kB | Download |
|
md5:6a3b3d406e0f8da9a814a338d4fd9f80
|
3.7 GB | Download |
|
md5:df2ed59c7a64d27450ca5870830273ee
|
481.7 kB | Download |
|
md5:ba8245fbc1a6932c02937e7609d0057c
|
1.4 MB | Download |
|
md5:a0a5010552cbc3587af3f0af65526ec7
|
313 Bytes | Download |
|
md5:32753e4c5bd0001c4aa2dffd18b0d7a6
|
604.4 kB | Download |
|
md5:2f6fe58bd7b9473ffb137f3e99c2fa87
|
3.5 GB | Download |
|
md5:2b2a3a237455a4dc2d5529496058a4b3
|
3.7 kB | Download |