Published September 7, 2017 | Version v1
Dataset Open

labranchor model files

Description

LaBranchoR (LSTM Branchpoint Retriever) uses a LSTM network built with keras to predict the position of RNA splicing branchpoints relative to a three prime splice site. Precisely evaluating LaBranchoR was challenging due to pervasive noise in the experimental data, but as we show in our paper, we estimate that LaBranchoR correcty predicts a branchpoint for over 90% of 3\'ss. Github link https://github.com/jpaggi/labranchor.

Notes

This dataset is used in the Kipoi model zoo for the labranchor model.

Files

Files (70.0 MB)

Name Size Download all
md5:936544855b253835442a0f253dd4b083
52.2 MB Download
md5:174fd11303ae2c2369094bfcbe303c07
17.4 MB Download
md5:1a93565c200740419fdd2c828eb467f7
449.1 kB Download