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Published 2022 | Version v4
Software Open

Fiji (ImageJ) plugin to read Xradia XRM files

Authors/Creators

  • 1. Evolutionary Biology, University of Vienna

Description

This is a plugin for Fiji (ImageJ) that reads *.xrm, *.txrm, and *.txm image files (from Xradia XRM systems) and opens them as a stack. Download the .zip folder and just drop the two jar files (poi-3.7.jar and XRM_Reader.jar) onto the Fiji main window.  

Also included is a macro to make thumbnails and metatdata text files for Xradia image files. The script automatically processes a directory and its subdirectories, leaving an easily readable thumbnail image and metadata file with the same filename base as each unpreviewable *.xrm, *.txrm, or *.txm image file. It makes an XYZ montage for each reconstructed stack and a 0°- 90° mugshot for each projection series (really first and middle projection - for a 360° scan it will be front and back images). 

There may be updates on this at https://microtomography.blogspot.com/

Files

Fiji-XRM_screenshot.jpg

Files (3.8 MB)

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md5:5ed90ea94af911a9a1b543ab5c609967
427.1 kB Preview Download
md5:eec931f7e13c75483dbd24856a1675e2
1.7 MB Preview Download
md5:71354d45ed9053c27037c721ce1ed48f
97.8 kB Preview Download
md5:8d11bc6e43f28601e237784b79dbae09
146.8 kB Preview Download
md5:6770ab6e51435f3d65ddbc77f58de183
778.1 kB Preview Download
md5:683f509d7c5b75ece2d61fb2b83f3230
118.3 kB Preview Download
md5:6269b0adbed9f9a5eb91f07fc6258048
602.0 kB Preview Download

Additional details

Dates

Updated
2024-01