Published December 27, 2025 | Version v5
Software Open

Fiji (ImageJ) plugin to open Xradia XRM files

Authors/Creators

  • 1. Evolutionary Biology, University of Vienna

Description

This is a Java plugin for Fiji (ImageJ) that reads *.xrm, *.txrm, and *.txm image files (from Xradia XRM systems) and opens them as a stack. It now also sets the voxel size in the Fiji stack using the pixel size in the XRM file. To install, just download the files and drop the two jar files (poi-3.7.jar and XRM_Reader.jar) one at a time onto the Fiji main window; see the Readme file.  

Also included is a macro to make thumbnails and metatdata text files for Xradia image files. The script automatically processes a directory and its subdirectories, leaving an easily readable thumbnail image and metadata file with the same filename base as each unpreviewable *.xrm, *.txrm, or *.txm image file. It makes an XYZ montage for each reconstructed stack and a 0°- 90° mugshot for each projection series. This version can take as input a single file, several files and directories. 

There may be updates on this at https://microtomography.blogspot.com/

Files

Fij_XRM_screenshot.png

Files (2.5 MB)

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md5:d9470706ec04957adb0adc86a569d41e
421.9 kB Preview Download
md5:4a0b55c6c5d6f9b808fc3e5c2767216a
1.7 MB Download
md5:2bb45e61f781f56ce6d7d908ed0ff6df
388.6 kB Preview Download
md5:98735bc6592f0463b48ae6915b5983de
6.5 kB Download
md5:2c741bbe6e8fee33745092f4d586ee3a
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md5:37b2b8c6a9ed5200fcb317f5d9c81c53
11.8 kB Download
md5:15e865927fffeefcbbb03f38dc6d827b
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md5:f6e2dc1ccbfc2cbf673fb5c039e2c31e
14.8 kB Download

Additional details

Dates

Updated
2025-12