Published December 27, 2024
| Version Zebrafish_Metabolites_20241220
Dataset
Open
Zebrafish Pathway Metabolite MetFrag Local CSV
Authors/Creators
- 1. LCSB, Uni Luxembourg
- 2. Maastricht University
Description
This is a local CSV file of Zebrafish metabolites for MetFrag (https://msbi.ipb-halle.de/MetFrag/) extracted from PubChem, based partially on previous data extracted from Wikipathways, KEGG and literature (DOI: 10.1371/journal.pone.0213661), combined in previous versions of this record (DOI: 10.5281/zenodo.3541624).
This file was created as documented on the ECI GitLab.
This file is designed for identification using MetFrag CL workflows (offline), this file will be integrated into MetFrag online; please use the file in the dropdown menu rather than uploading this one.
Notes
File is created using automated extraction and mapping (see code), with no additional experimental verification
Files
Zebrafish_Metabolites_20241220.csv
Files
(487.5 kB)
| Name | Size | Download all |
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md5:692460e271fb3eb4ceddd6333bac5da2
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Additional details
Related works
- Is derived from
- https://www.genome.jp/kegg-bin/show_pathway?dre01100 (URL)
- http://sparql.wikipathways.org (URL)
- Journal article: 10.1371/journal.pone.0213661 (DOI)
- Dataset: https://pubchem.ncbi.nlm.nih.gov/taxonomy/7955#section=Chemicals-and-Bioactivities (URL)
- Is supplement to
- https://msbi.ipb-halle.de/MetFrag/ (URL)