Long-read data analysis workshop. Raw and pre-processed data
Creators
- 1. University of New South Wales
- 2. University of Technology, Sydney
- 3. Ramaciotti Centre for Genomics
Description
Datasets generated for the tutorials of the Long-read Data Analysis Workshop held at UNSW (Sydney, Australia) on 27-28 September 2018.
This Long-read Data Analysis Workshop was a two-day workshop held on 27-28 September 2018 at the University of New South Wales.
The workshop aimed to introduce attendees to genome assembly using long-read data. PacBio, Oxford Nanopore and Chromium 10x approaches were covered within the workshop. Participants were given hands-on experience of using data QC and assembly tools for both PacBio and Oxford Nanopore data.
The contents of this repository correspond to the raw and pre-processed data required to follow the tutorials.
Day 1:
- Tutorial: Day_1_practicals_LRDW.html or Day_1_practicals_LRDW.pdf (printer-friendly)
- Klebsiella_pneumoniae_25727.tar.gz (main dataset)
- Staphylococcus_aureus_25745.tar.gz
- Staphylococcus_aureus_25747.tar.gz
Day 2:
- Tutorial: Day_2_practicals_LRDW.pdf
- nanopore_practicals.tar.gz
To extract the contents on your command line simply run this on your command line:
tar xvzf filename.tar.gz
Additional contents of the workshop are located in their respective repositories:
- Combined presentations:
https://f1000research.com/slides/7-1595 - Individual presentations available at:
https://bitbucket.org/xvazquezc/longread2018
Files
Day_1_practicals_LRDW.pdf
Files
(11.7 GB)
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